Alan Frankel, PhD

Professor
Department of Biochemistry and Biophysics
+1 415 476-9994
Research Overview: 

The Frankel Lab focuses on RNA-protein recognition and the assembly of RNA-based regulatory complexes. We use biochemistry, structural methods, proteomics, and virology to investigate two essential regulatory complexes in HIV: the viral Tat protein and its interactions with the host transcription machinery, and the viral Rev protein and its interactions with host nuclear export complexes. In concert with proteomic studies of HIV-human protein complexes, our studies have led to an understanding of how the virus has evolved adaptable protein interfaces to hijack these two host machines and establish a unique regulatory circuit that drives gene expression during the HIV life cycle.

Primary Thematic Area: 
Virology & Microbial Pathogenesis
Secondary Thematic Area: 
None
Research Summary: 
RNA-Protein Complexes

Websites

Publications: 

The HIV-1 Nuclear Export Complex Reveals the Role of RNA in Crm1 Cargo Recognition.

bioRxiv : the preprint server for biology

Smith AM, Li Y, Velarde A, Cheng Y, Frankel AD

Enhanced NF-κB activation via HIV-1 Tat-TRAF6 cross-talk.

Science advances

Li Y, Liu X, Fujinaga K, Gross JD, Frankel AD

Functional and structural segregation of overlapping helices in HIV-1.

eLife

Safari M, Jayaraman B, Yang S, Smith C, Fernandes JD, Frankel AD

Global post-translational modification profiling of HIV-1-infected cells reveals mechanisms of host cellular pathway remodeling.

Cell reports

Johnson JR, Crosby DC, Hultquist JF, Kurland AP, Adhikary P, Li D, Marlett J, Swann J, Hüttenhain R, Verschueren E, Johnson TL, Newton BW, Shales M, Simon VA, Beltrao P, Frankel AD, Marson A, Cox JS, Fregoso OI, Young JAT, Krogan NJ

Phosphoregulation of Phase Separation by the SARS-CoV-2 N Protein Suggests a Biophysical Basis for its Dual Functions.

Molecular cell

Carlson CR, Asfaha JB, Ghent CM, Howard CJ, Hartooni N, Safari M, Frankel AD, Morgan DO