Genome biology

Maast: genotyping thousands of microbial strains efficiently.

Genome biology

Shi ZJ, Nayfach S, Pollard KS

An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype.

Genome biology

Shah PP, Keough KC, Gjoni K, Santini GT, Abdill RJ, Wickramasinghe NM, Dundes CE, Karnay A, Chen A, Salomon REA, Walsh PJ, Nguyen SC, Whalen S, Joyce EF, Loh KM, Dubois N, Pollard KS, Jain R

Systemic interindividual epigenetic variation in humans is associated with transposable elements and under strong genetic control.

Genome biology

Gunasekara CJ, MacKay H, Scott CA, Li S, Laritsky E, Baker MS, Grimm SL, Jun G, Li Y, Chen R, Wiemels JL, Coarfa C, Waterland RA

ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma.

Genome biology

Babikir H, Wang L, Shamardani K, Catalan F, Sudhir S, Aghi MK, Raleigh DR, Phillips JJ, Diaz AA

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.

Genome biology

Bonora G, Ramani V, Singh R, Fang H, Jackson DL, Srivatsan S, Qiu R, Lee C, Trapnell C, Shendure J, Duan Z, Deng X, Noble WS, Disteche CM

AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data.

Genome biology

Thibodeau A, Eroglu A, McGinnis CS, Lawlor N, Nehar-Belaid D, Kursawe R, Marches R, Conrad DN, Kuchel GA, Gartner ZJ, Banchereau J, Stitzel ML, Cicek AE, Ucar D

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