Karin Pelka, PhD

Assistant Investigator
Assistant Professor
Gladstone-UCSF Institute of Genomic Immunology
Department of Microbiology and Immunology
Primary Thematic Area
Secondary Thematic Area
Research Summary
Using single cell genomics and tissue imaging, we study the cellular interactions that shape immune responses in human tumors in order to harness the immune system in the fight against cancer.

Immunotherapy, the use of agents that stimulate or suppress immune responses to combat disease, has revolutionized the treatment of certain types of cancer. However, many cancers are unresponsive to immunotherapy for reasons that remain poorly understood. Immune cells cannot execute their function in isolation, but require interactions with other immune and non-immune cells. In a large collaborative systems biology effort, we discovered multiple cellular communities—or “hubs” where malignant and immune cells interact in the tumors of patients with colorectal cancer. Furthermore, we found that tumors that were likely to respond to immunotherapy contained different types of hubs than those who don’t respond. By pursuing the characterization of immune hubs in solid tumors, we hope to identify molecular mechanisms that could be harnessed to design novel immunotherapies for currently non-responsive tumors.

Publications

Spatially organized multicellular immune hubs in human colorectal cancer.

Cell

Pelka K, Hofree M, Chen JH, Sarkizova S, Pirl JD, Jorgji V, Bejnood A, Dionne D, Ge WH, Xu KH, Chao SX, Zollinger DR, Lieb DJ, Reeves JW, Fuhrman CA, Hoang ML, Delorey T, Nguyen LT, Waldman J, Klapholz M, Wakiro I, Cohen O, Albers J, Smillie CS, Cuoco MS, Wu J, Su MJ, Yeung J, Vijaykumar B, Magnuson AM, Asinovski N, Moll T, Goder-Reiser MN, Applebaum AS, Brais LK, DelloStritto LK, Denning SL, Phillips ST, Hill EK, Meehan JK, Frederick DT, Sharova T, Kanodia A, Todres EZ, Jané-Valbuena J, Biton M, Izar B, Lambden CD, Clancy TE, Bleday R, Melnitchouk N, Irani J, Kunitake H, Berger DL, Srivastava A, Hornick JL, Ogino S, Rotem A, Vigneau S, Johnson BE, Corcoran RB, Sharpe AH, Kuchroo VK, Ng K, Giannakis M, Nieman LT, Boland GM, Aguirre AJ, Anderson AC, Rozenblatt-Rosen O, Regev A, Hacohen N

Western Diet Triggers NLRP3-Dependent Innate Immune Reprogramming.

Cell

Christ A, Günther P, Lauterbach MAR, Duewell P, Biswas D, Pelka K, Scholz CJ, Oosting M, Haendler K, Baßler K, Klee K, Schulte-Schrepping J, Ulas T, Moorlag SJCFM, Kumar V, Park MH, Joosten LAB, Groh LA, Riksen NP, Espevik T, Schlitzer A, Li Y, Fitzgerald ML, Netea MG, Schultze JL, Latz E